Tisged: a database for tissue-specific genes

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August undefined, 2024

WebFeb 12, 2013 · TiSGeD was also based on a collection from publicly available microarray experiment, but provided very vague definition of “well curated publicly” good data. Plus (as you indicated) it has a dead link anyway. Shyamasundar, R. et al paper on Genome Biology (2005) was a good pick.

TiSGeD: a database for tissue-specific genes - Oxford …

WebDec 20, 2013 · The TiSGeD database also includes genes selectively expressed in particular cancerous, as opposed to normal, adult tissues. A natural question concerns whether some oncogenic (and/or genetic) disorders are associated with disruption of the supra-chromosomal bodymap. WebApr 1, 2011 · VeryGene serves as a TSG-specific knowledgebase and a discovery tool to generate testable hypotheses for basic and clinical research. METHODS Although there … btcc history

Normalization of gene expression measurement of tissue …

WebOct 18, 2011 · Database content statistics. By integrating organ-specific protein/genes and disease databases including dbEST [], TiSGeD [], HPA [], CTD [], and Disease Ontology [], we have developed HOMER, the Human Organ-specific Molecular Electronic Repository.As of the current release (June 2011), HOMER contains 22,598 proteins (IPI IDs), 5,703 genes … WebFeb 18, 2016 · One group summarizes in a single number whether a gene is tissue specific or ubiquitously expressed (Tau, Gini, TSI, Counts and Hg), and the second group shows for … WebThe expression profile of the five genes in a specific tissue or organ system was also identified using BioGPS. The results showed that CCNA2 expression was highest in B lymphoblast, followed by CD34 and CD105+ endothelial cells. Similarly, CCNB1 expression was highest in B lymphoblast, followed by CD71+ early erythroid and CD105+ endothelial ... btcc horsepower

VeryGene: linking tissue-specific genes to diseases, drugs, and …

WebOct 15, 2024 · We also found the tissue-specific gene expression of SOD1 (liver and kidney), SOD2 (heart and muscle), and SOD3 (lung and kidney). ... and TiSGeD (Tissue-Specific Genes Database) . Genome-wide analyses support the association between tissue-specific gene expression and tissue-restricted protein function, and our data also correlate … WebThe measurements were undertaken on nine To obtain a gene-specific probe for QpHb1, a 349-bp DNA individual pots (each containing one plant) from three fragment was amplified by PCR from both the 5′-UTR and independent experiments. coding sequence of … exercise for fat lossWebBroadly, these metrics can be divided into two groups 9: (1) general scoring metrics, that summarize in a single value how tissue-specific or ubiquitous is a gene across all tissues … exercise for fat inside knees

"WebSep 28, 2015 · 2008), and count a gene as specific only if expressed in a single tissue. This method causes only highly expressed genes to be taken into account; and if a data set contains closely related tissues (e.g., brain parts), less tissue specific genes can be determined. Other papers use a very " - Tisged: a database for tissue-specific genes

Tisged: a database for tissue-specific genes

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WebMay 1, 2010 · The tissue-specific genes are a group of genes whose function and expression are preferred in one or several tissues/cell types. Identification of these … Webthe tissue-speciﬁc genes database (TiSGeD), which particularly provides information of tissue-speciﬁc genes derived from literature and data mining of gene expression proﬁles.

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WebApr 13, 2024 · The pathophysiology of atopic dermatitis (AD) is complex, multifactorial, and not fully understood. Genes encoding collagens, the most abundant proteins in the extracellular matrix (ECM), may play a potential role in the pathogenesis of AD. Our study aimed to estimate the associations between Col3A1/rs1800255, Col6A5 /29rs12488457, … WebTiGER is a database developed by the Bioinformatics Lab at Wilmer Eye Institute of Johns Hopkins University. The database contains tissue-specific gene expression profiles or …

WebSummary: The tissue-specific genes are a group of genes whose function and expression are preferred in one or several tissues/cell types. Identification of these genes helps better … http://bioinf.xmu.edu.cn/PaGenBase/

WebWe first collected 8,172 TissGenes across 22 tissue types, which are matched with the 28 cancer types of The Cancer Genome Atlas (TCGA) project, from three representative tissue-specific gene expression resources: The Human Protein Atlas (HPA), tissue-specific gene expression and regulation (TiGER), and Genotype-Tissue Expression (GTEx). WebApr 26, 2024 · TiSGeD: A database for tissue-specific genes. Bioinformatics. 2010;26:1273–5. Article CAS Google Scholar Kim P, Park A, Han G, Sun H, Jia P, Zhao Z. TissGDB: Tissue-specific gene database in cancer. Nucleic Acids Res. 2024;46:D1031–8. Article CAS Google Scholar Tang Z, Kang B, Li C, Chen T, Zhang Z. GEPIA2: an enhanced …

WebTiSGeD: a database for tissue-speciﬁc genes Sheng-Jian Xiao 1 , Chi Zhang 1 , Quan Zou 1 and Zhi-Liang Ji 1 , 2 , ∗ 1 Key Laboratory for Cell Biology and Tumor Cell Engineering, the Ministry ...

WebMar 11, 2010 · The tissue-specific genes are a group of genes whose function and expression are preferred in one or several tissues/cell types. Identification of these genes … btcc hybridWebSummary: The tissue-specific genes are a group of genes whose function and expression are preferred in one or several tissues/cell types. Identification of these genes helps better … exercise for fat thighsWebObjective: Primary central nervous system lymphoma (PCNSL) is a specific type of non-Hodgkin lymphoma with poor prognosis. The rare incidence of this disease and difficulty to obtain sufficient tissue material impede deep research into PCNSL. However, application of modern molecular techniques makes it possible to find biological characteristics … exercise for fat loss in gymWebApr 27, 2011 · We recommend to use databases such as TiGER 42 , TiSGeD 43 , VeryGene 44 and TissGDB 45 if tissue-specificity in disease or tissues absent in GTEx represent the focus of reader's research. ...... btcc hoursWebNov 1, 2024 · The TissueEnrich package is used to calculate enrichment of tissue-specific genes in a set of input genes. For example, the user can input the most highly expressed genes from RNA-Seq data, or gene co-expression modules to determine which tissue-specific genes are enriched in those datasets. Tissue-specific genes were defined by … btcc hybrid explainedhttp://bioinfo.wilmer.jhu.edu/tiger/ btcc hybrid carWebNov 25, 2024 · Strictly, tissue-specific genes refer to genes whose function and expression are limited to specific tissue or cell types. In many cases, however, the concept of … btcc hybrid engine